Patient documents

Our patient document folders are a mess.  A former employee created the folders and now a year and a half later, we’d like to make some changes. I know, just from years of working in eCW, that editing and moving folders can cause a ton of issues, especially deleting a folder, which dumps all documents, across all patient’s into a MISC folder, which for us, is already full of unnecessary documents.  Our medical records director wants to merge several folders and I don’t know a way to do this and eCW has said this cannot be done.  Anyone know any differently?
Thanks,
Karen